FastQCFastQC Report
Wed 12 Oct 2016
SRR1976948_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1976948_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Sequences flagged as poor quality0
Sequence length251
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTCGTG7700.005673703711.1348977
CACACGT106800.05.9639325245
TGCTTGA56202.1482265E-95.884751245
GTATGCC63101.5825208E-105.823613245
TCTGAAC104400.05.7490516245
AACTCCA105400.05.6945066245
ACGTCTG103300.05.573117245
GTCACCT82501.8189894E-125.4934907245
CCTTGTA81705.456968E-125.3973565245
GCACACG112300.05.344621245
Produced by FastQC (version 0.11.2)