FastQCFastQC Report
Wed 12 Oct 2016
SRR1976948_1.qc.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1976948_1.qc.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences885734
Sequences flagged as poor quality0
Sequence length27-251
%GC44

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG14800.015.741811245
AGATCGG43800.014.837632245
TTAGATC12051.3768135E-410.175969245
GAGATCG35701.8317223E-97.5564404245
GAGGGGG25800.00595141255.7032757245
Produced by FastQC (version 0.11.2)